Variant report

Variant	rs4408323
Chromosome Location	chr11:119648458-119648459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10790344	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790345	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892454	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892456	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892457	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892458	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892459	0.94[EUR][1000 genomes]
rs10892460	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10892461	0.94[EUR][1000 genomes]
rs11217495	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217501	0.94[EUR][1000 genomes]
rs11217502	0.94[EUR][1000 genomes]
rs11217503	0.94[EUR][1000 genomes]
rs11606569	0.94[EUR][1000 genomes]
rs12222723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1466051	0.94[EUR][1000 genomes]
rs1466052	0.94[EUR][1000 genomes]
rs34809912	0.97[ASN][1000 genomes]
rs35121417	0.88[ASN][1000 genomes]
rs35662046	0.94[EUR][1000 genomes]
rs4258392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4269933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301801	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331115	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4341549	0.94[EUR][1000 genomes]
rs4418818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4608095	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5020632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5020633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5026369	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589772	0.91[EUR][1000 genomes]
rs6589776	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67007544	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7103360	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7926574	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936400	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942259	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326253	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
2	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119644400-119649400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:119644600-119648600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:119645000-119648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119647000-119654400	Enhancers	Fetal Heart	heart
8	chr11:119647400-119648600	Weak transcription	Right Ventricle	heart
9	chr11:119647400-119650000	Weak transcription	Right Atrium	heart
10	chr11:119647600-119650200	Weak transcription	Ovary	ovary

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