Variant report

Variant	rs7929505
Chromosome Location	chr11:119647159-119647160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119645625..119647628-chr11:119648979..119651393,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10892453	0.86[ASN][1000 genomes]
rs10892459	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10892460	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10892461	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11217501	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11217502	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11217503	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11606569	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12803325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466051	0.94[ASN][1000 genomes]
rs1466052	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34033074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34228131	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34809912	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35662046	0.94[ASN][1000 genomes]
rs4331115	0.96[ASN][1000 genomes]
rs4341549	0.99[ASN][1000 genomes]
rs4388901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4420283	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5026369	0.91[ASN][1000 genomes]
rs59814528	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6589772	0.98[ASN][1000 genomes]
rs6589774	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67007544	0.96[ASN][1000 genomes]
rs7103360	0.95[ASN][1000 genomes]
rs7119690	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
2	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119644400-119649400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:119644600-119648600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:119645000-119648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119646800-119647400	Enhancers	Pancreas	Pancrea
8	chr11:119646800-119648400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:119647000-119647200	Enhancers	Left Ventricle	heart
10	chr11:119647000-119647400	Enhancers	Right Atrium	heart
11	chr11:119647000-119647400	Enhancers	Right Ventricle	heart
12	chr11:119647000-119654400	Enhancers	Fetal Heart	heart

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