Variant report

Variant	rs4351828
Chromosome Location	chr11:119627450-119627451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119621036..119623872-chr11:119625364..119628565,3	MCF-7	breast:
2	chr11:119622707..119625019-chr11:119625519..119627831,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10790342	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790343	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892448	0.92[EUR][1000 genomes]
rs10892451	0.95[ASN][1000 genomes]
rs10892452	0.96[EUR][1000 genomes]
rs11217458	0.90[EUR][1000 genomes]
rs11217460	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11217466	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11217471	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365133	0.90[EUR][1000 genomes]
rs4317995	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7110679	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7124166	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7131676	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936400	0.81[EUR][1000 genomes]
rs7949076	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119614400-119628200	Weak transcription	Gastric	stomach
3	chr11:119622000-119629200	Enhancers	Brain Germinal Matrix	brain
4	chr11:119623400-119629600	Weak transcription	Spleen	Spleen
5	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:119624400-119627600	Weak transcription	Fetal Brain Female	brain
7	chr11:119624400-119629800	Weak transcription	Liver	Liver
8	chr11:119624600-119628000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:119625600-119627600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:119625600-119627800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:119625600-119628200	Weak transcription	Left Ventricle	heart
12	chr11:119625800-119628000	Enhancers	GM12878-XiMat	blood
13	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
14	chr11:119626000-119628600	Enhancers	Fetal Brain Male	brain
15	chr11:119626200-119627800	Enhancers	Brain Hippocampus Middle	brain
16	chr11:119626400-119629200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:119626600-119627600	Enhancers	HMEC	breast
18	chr11:119626600-119631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:119626800-119627600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:119626800-119629800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:119626800-119629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:119627000-119627600	Enhancers	Fetal Stomach	stomach
24	chr11:119627000-119627800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:119627000-119628400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:119627000-119628400	Enhancers	Brain Substantia Nigra	brain
27	chr11:119627000-119628400	Enhancers	HSMMtube	muscle
28	chr11:119627400-119629000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:119627400-119630000	Weak transcription	Fetal Muscle Leg	muscle

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