Variant report

Variant	rs12365133
Chromosome Location	chr11:119620456-119620457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10790342	0.92[EUR][1000 genomes]
rs10790343	0.92[EUR][1000 genomes]
rs10892448	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892452	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11217458	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11217460	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11217461	0.99[ASN][1000 genomes]
rs11217466	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11217467	0.82[ASN][1000 genomes]
rs11217471	0.92[EUR][1000 genomes]
rs34952981	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4317995	0.95[EUR][1000 genomes]
rs4351828	0.90[EUR][1000 genomes]
rs7110679	0.89[EUR][1000 genomes]
rs7124166	0.92[EUR][1000 genomes]
rs7131676	0.93[EUR][1000 genomes]
rs7949076	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7950159	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119622200	Weak transcription	Esophagus	oesophagus
2	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
3	chr11:119613800-119625400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:119614400-119625200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119614400-119628200	Weak transcription	Gastric	stomach
6	chr11:119619400-119623200	Weak transcription	Fetal Heart	heart
7	chr11:119619600-119621000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:119619800-119620800	Weak transcription	Pancreas	Pancrea
9	chr11:119619800-119622800	Weak transcription	HMEC	breast
10	chr11:119620400-119623000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links