Variant report

Variant	rs11217474
Chromosome Location	chr11:119631726-119631727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892448	0.81[ASN][1000 genomes]
rs10892451	0.94[EUR][1000 genomes]
rs10892452	0.92[ASN][1000 genomes]
rs11217461	0.89[EUR][1000 genomes]
rs11217467	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217476	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277255	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290653	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34952981	0.93[EUR][1000 genomes]
rs35633147	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59814528	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7950159	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
4	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:119629800-119631800	Enhancers	Liver	Liver
7	chr11:119630800-119635000	Weak transcription	GM12878-XiMat	blood
8	chr11:119631000-119634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:119631000-119635200	Weak transcription	HMEC	breast
10	chr11:119631200-119635400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:119631400-119631800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:119631400-119634800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:119631600-119633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:119631600-119634200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:119631600-119635000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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