Variant report

Variant	rs10895224
Chromosome Location	chr11:101800753-101800754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11225068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11225086	1.00[CHB][hapmap]
rs11225103	0.83[ASN][1000 genomes]
rs11225104	0.83[ASN][1000 genomes]
rs12278546	0.83[ASN][1000 genomes]
rs12794798	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12797831	0.83[EUR][1000 genomes]
rs12802591	0.87[YRI][hapmap]
rs1470196	0.83[ASN][1000 genomes]
rs2119734	0.96[YRI][hapmap]
rs2282612	0.87[YRI][hapmap]
rs7104090	0.83[ASN][1000 genomes]
rs7105709	0.87[YRI][hapmap]
rs7109614	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10895224	C11orf70	cis	cerebellum	SCAN
rs10895224	DCUN1D5	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101786200-101802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:101787000-101801200	Weak transcription	Fetal Stomach	stomach
3	chr11:101787200-101802000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:101787400-101802600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:101787400-101815600	Weak transcription	Adipose Nuclei	Adipose
7	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:101787600-101809200	Weak transcription	A549	lung
14	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
15	chr11:101789000-101815200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:101793800-101816000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:101798400-101829200	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:101798800-101806800	Weak transcription	Primary B cells from cord blood	blood
19	chr11:101800000-101800800	Enhancers	HepG2	liver
20	chr11:101800400-101815200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:101800400-101816400	Weak transcription	Ovary	ovary
22	chr11:101800400-101826400	Weak transcription	Aorta	Aorta
23	chr11:101800400-101830200	Weak transcription	Fetal Lung	lung
24	chr11:101800600-101800800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:101800600-101801200	Weak transcription	Left Ventricle	heart
26	chr11:101800600-101802000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:101800600-101811600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:101800600-101820400	Weak transcription	Brain Anterior Caudate	brain

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