Variant report

Variant	rs11225104
Chromosome Location	chr11:101878353-101878354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101731437..101732505-chr11:101878341..101879203,3	MCF-7	breast:
2	chr11:101731243..101732246-chr11:101878260..101879259,5	MCF-7	breast:
3	chr11:101877353..101879221-chr11:101982270..101984771,2	MCF-7	breast:
4	chr11:101781201..101783216-chr11:101876018..101878487,2	MCF-7	breast:
5	chr11:101732949..101733736-chr11:101878285..101879187,3	MCF-7	breast:
6	chr11:101877251..101879953-chr11:101882606..101885074,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137693	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10895224	0.83[ASN][1000 genomes]
rs11225103	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278546	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284492	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1470196	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104090	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11225104	ANGPTL5	cis	Thyroid	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
3	chr11:101859600-101878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:101864200-101878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101866600-101878400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:101867000-101880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:101869200-101881400	Weak transcription	Adipose Nuclei	Adipose
8	chr11:101869400-101878400	Weak transcription	Ovary	ovary
9	chr11:101873000-101880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:101873200-101878400	Weak transcription	NHDF-Ad	bronchial
11	chr11:101873400-101881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:101876400-101881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:101876600-101878800	Enhancers	HepG2	liver
14	chr11:101876600-101880800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:101876800-101878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:101876800-101881600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:101877200-101878400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:101877400-101878600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:101877600-101878600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:101877600-101878600	Enhancers	Stomach Mucosa	stomach
21	chr11:101877600-101878800	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr11:101877600-101878800	Enhancers	Hela-S3	cervix
23	chr11:101877800-101878600	Enhancers	Fetal Intestine Large	intestine
24	chr11:101877800-101878600	Enhancers	Fetal Lung	lung
25	chr11:101877800-101878800	Enhancers	Liver	Liver
26	chr11:101877800-101878800	Enhancers	NHEK	skin
27	chr11:101878000-101878600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:101878000-101878600	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:101878000-101878600	Enhancers	Fetal Intestine Small	intestine
30	chr11:101878000-101878600	Enhancers	HMEC	breast
31	chr11:101878000-101878800	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr11:101878000-101881600	Weak transcription	Fetal Heart	heart
33	chr11:101878200-101878600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr11:101878200-101878600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:101878200-101878600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:101878200-101878600	Enhancers	Colon Smooth Muscle	Colon
37	chr11:101878200-101878600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr11:101878200-101878600	Enhancers	Pancreas	Pancrea
39	chr11:101878200-101878600	Enhancers	Rectal Smooth Muscle	rectum
40	chr11:101878200-101878600	Enhancers	NHLF	lung
41	chr11:101878200-101878800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:101878200-101878800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:101878200-101878800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:101878200-101878800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:101878200-101878800	Active TSS	A549	lung
46	chr11:101878200-101878800	Enhancers	HUVEC	blood vessel
47	chr11:101878200-101878800	Enhancers	NH-A	brain
48	chr11:101878200-101879000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:101878200-101879000	Enhancers	Muscle Satellite Cultured Cells	--

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