Variant report

Variant	rs1470196
Chromosome Location	chr11:101880373-101880374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10895224	0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs11225103	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225104	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278546	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284492	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7104090	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
2	chr11:101867000-101880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:101869200-101881400	Weak transcription	Adipose Nuclei	Adipose
4	chr11:101873000-101880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:101873400-101881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:101876400-101881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:101876600-101880800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:101876800-101881600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:101878000-101881600	Weak transcription	Fetal Heart	heart
10	chr11:101878600-101880600	Weak transcription	HMEC	breast
11	chr11:101878600-101880600	Weak transcription	NHLF	lung
12	chr11:101878600-101880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:101878600-101880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:101878600-101880800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:101878600-101880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:101878600-101880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:101878600-101880800	Weak transcription	Fetal Intestine Large	intestine
18	chr11:101878600-101881000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:101878600-101881400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:101878600-101881400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:101878600-101881400	Weak transcription	Stomach Mucosa	stomach
22	chr11:101878600-101881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:101878600-101881600	Weak transcription	Fetal Lung	lung
24	chr11:101878600-101882000	Weak transcription	Ovary	ovary
25	chr11:101878800-101880600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:101878800-101880600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:101878800-101880600	Weak transcription	NHDF-Ad	bronchial
28	chr11:101878800-101880600	Weak transcription	NHEK	skin
29	chr11:101878800-101880800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:101878800-101880800	Weak transcription	HSMM	muscle
31	chr11:101878800-101880800	Weak transcription	HUVEC	blood vessel
32	chr11:101878800-101881000	Weak transcription	Hela-S3	cervix
33	chr11:101878800-101881000	Weak transcription	NH-A	brain
34	chr11:101878800-101881400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:101878800-101881600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:101878800-101881600	Weak transcription	HepG2	liver
37	chr11:101878800-101881800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:101879000-101880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:101879000-101880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:101879000-101881000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:101879000-101881400	Weak transcription	Osteobl	bone
42	chr11:101879000-101881600	Enhancers	A549	lung
43	chr11:101879400-101884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:101880000-101880400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links