Variant report

Variant	rs10895358
Chromosome Location	chr11:102622277-102622278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11225394	0.82[EUR][1000 genomes]
rs11225399	0.82[EUR][1000 genomes]
rs11225400	0.82[EUR][1000 genomes]
rs11225415	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1892886	0.82[EUR][1000 genomes]
rs1938897	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940465	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34546185	0.82[EUR][1000 genomes]
rs4121365	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4614410	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61893957	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61893958	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61893959	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895560	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102618400-102622800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:102618600-102622400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:102619200-102622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:102620600-102624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:102620600-102624200	Weak transcription	NHEK	skin
6	chr11:102620600-102624400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:102620600-102628600	Weak transcription	HMEC	breast
8	chr11:102620600-102628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:102622000-102623200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:102622000-102623200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:102622200-102622800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:102622200-102623200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:102622200-102623400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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