Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10895358	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11225388	0.86[CEU][hapmap];1.00[MKK][hapmap]
rs11225389	0.86[CEU][hapmap];1.00[MKK][hapmap]
rs11225394	0.87[EUR][1000 genomes]
rs11225399	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs11225400	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs11225415	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11607205	0.87[CHD][hapmap];1.00[MKK][hapmap]
rs12418360	1.00[ASW][hapmap]
rs1892886	0.95[CEU][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs1938897	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1940465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2509010	0.82[CHD][hapmap]
rs2846703	0.82[CHD][hapmap]
rs34546185	0.87[EUR][1000 genomes]
rs3809018	0.82[CHD][hapmap];1.00[MKK][hapmap]
rs4614410	0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs470154	1.00[ASW][hapmap]
rs470558	1.00[ASW][hapmap]
rs491152	1.00[ASW][hapmap]
rs547561	1.00[ASW][hapmap]
rs61893957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61893959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895560	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4121365	YAP1	cis	parietal	SCAN
rs4121365	TRPC6	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102602200-102606600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102604600-102620000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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