Variant report

Variant	rs470558
Chromosome Location	chr11:102666316-102666317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12418360	1.00[ASW][hapmap]
rs470130	0.88[JPT][hapmap]
rs470154	1.00[ASW][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs470209	1.00[AFR][1000 genomes]
rs470221	0.84[ASN][1000 genomes]
rs470226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs470249	1.00[AFR][1000 genomes]
rs470277	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs470329	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs488178	0.84[ASN][1000 genomes]
rs491152	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs521898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs547561	1.00[ASW][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102651600-102667600	Weak transcription	NHDF-Ad	bronchial
2	chr11:102655600-102668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:102657200-102667600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:102662000-102667600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:102662200-102668400	Weak transcription	NHLF	lung
6	chr11:102663000-102668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:102663000-102668600	Weak transcription	NHEK	skin
8	chr11:102664200-102668800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:102664400-102667600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:102665200-102667400	Weak transcription	HUVEC	blood vessel
11	chr11:102665200-102669400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:102665400-102668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:102665400-102668400	Weak transcription	HMEC	breast
14	chr11:102665400-102672000	Weak transcription	Fetal Stomach	stomach
15	chr11:102666200-102667800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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