Variant report

Variant	rs2509010
Chromosome Location	chr11:102562700-102562701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10895347	0.84[ASN][1000 genomes]
rs10895349	1.00[ASN][1000 genomes]
rs10895351	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs10895352	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs11225376	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs11225380	0.98[ASN][1000 genomes]
rs11225388	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[ASN][1000 genomes]
rs11225389	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[ASN][1000 genomes]
rs11225394	0.88[ASN][1000 genomes]
rs11225399	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11225400	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11603733	0.91[ASN][1000 genomes]
rs11605152	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs11607205	1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];1.00[ASN][1000 genomes]
rs12361599	0.89[ASN][1000 genomes]
rs12364257	0.89[ASN][1000 genomes]
rs12365082	0.89[ASN][1000 genomes]
rs12366109	0.89[ASN][1000 genomes]
rs1276271	0.82[YRI][hapmap]
rs1276273	0.83[AFR][1000 genomes]
rs1276283	0.89[ASN][1000 genomes]
rs1276284	0.89[ASN][1000 genomes]
rs1320632	0.82[YRI][hapmap]
rs17357454	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs1892884	0.89[ASN][1000 genomes]
rs1892886	1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[ASN][1000 genomes]
rs1940048	1.00[ASN][1000 genomes]
rs1940479	0.83[AFR][1000 genomes]
rs1940481	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2155052	0.82[YRI][hapmap]
rs2701988	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2701994	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2846702	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs2846703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2846706	0.83[AFR][1000 genomes]
rs2846707	0.91[CHB][hapmap];0.94[CHD][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs34043888	0.85[ASN][1000 genomes]
rs34326700	0.89[ASN][1000 genomes]
rs34546185	0.88[ASN][1000 genomes]
rs3809018	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs61893901	0.84[ASN][1000 genomes]
rs61893905	1.00[ASN][1000 genomes]
rs61893906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893941	0.96[ASN][1000 genomes]
rs7121624	0.82[YRI][hapmap]
rs947875	0.86[ASN][1000 genomes]
rs948217	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2509010	MMP27	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102558400-102565600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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