Variant report

Variant	rs947875
Chromosome Location	chr11:102577669-102577670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:102577654-102578068	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
MMP27	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10895349	0.86[ASN][1000 genomes]
rs10895351	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10895352	0.91[CHB][hapmap]
rs11225376	0.91[CHB][hapmap]
rs11225380	0.85[ASN][1000 genomes]
rs11225388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11225389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11225394	0.95[ASN][1000 genomes]
rs11225399	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs11225400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11603733	0.95[ASN][1000 genomes]
rs11605152	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11607205	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12361599	0.96[ASN][1000 genomes]
rs12364257	0.96[ASN][1000 genomes]
rs12365082	0.96[ASN][1000 genomes]
rs12366109	0.96[ASN][1000 genomes]
rs1276271	1.00[YRI][hapmap]
rs1276282	0.86[AFR][1000 genomes]
rs1276283	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1276284	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1291327	0.86[AFR][1000 genomes]
rs1320632	1.00[YRI][hapmap]
rs17357454	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs1892884	0.96[ASN][1000 genomes]
rs1892886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1939018	0.86[AFR][1000 genomes]
rs1940048	0.86[ASN][1000 genomes]
rs1940481	1.00[YRI][hapmap]
rs2155052	1.00[YRI][hapmap]
rs2509010	1.00[CHB][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs2701988	1.00[YRI][hapmap]
rs2701994	1.00[YRI][hapmap]
rs2846363	1.00[YRI][hapmap]
rs2846702	1.00[YRI][hapmap]
rs2846703	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2846707	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34043888	0.91[ASN][1000 genomes]
rs34326700	0.96[ASN][1000 genomes]
rs34546185	0.95[ASN][1000 genomes]
rs3809018	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs61893905	0.86[ASN][1000 genomes]
rs61893906	0.86[ASN][1000 genomes]
rs61893941	0.90[ASN][1000 genomes]
rs7121624	1.00[YRI][hapmap]
rs948217	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102572600-102579800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:102577000-102579800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:102577000-102579800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:102577200-102580200	Weak transcription	NHDF-Ad	bronchial

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