Variant report

Variant	rs11225400
Chromosome Location	chr11:102602722-102602723
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10895349	0.83[ASN][1000 genomes]
rs10895351	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10895352	0.91[CHB][hapmap]
rs10895358	0.82[EUR][1000 genomes]
rs11225376	0.90[CHB][hapmap]
rs11225380	0.81[ASN][1000 genomes]
rs11225388	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11225389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11225394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225399	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603733	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11605152	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11607205	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12361599	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364257	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12365082	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12366109	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1276283	0.93[ASN][1000 genomes]
rs1276284	0.93[ASN][1000 genomes]
rs17357454	0.91[CHB][hapmap]
rs1892884	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1892886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938897	0.83[EUR][1000 genomes]
rs1940048	0.83[ASN][1000 genomes]
rs1940465	0.87[EUR][1000 genomes]
rs2509010	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2846703	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2846707	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34043888	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34326700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34546185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3809018	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4121365	0.87[EUR][1000 genomes]
rs4614410	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs61893905	0.83[ASN][1000 genomes]
rs61893906	0.83[ASN][1000 genomes]
rs61893941	0.86[ASN][1000 genomes]
rs61893957	0.87[EUR][1000 genomes]
rs61893958	0.87[EUR][1000 genomes]
rs61893959	0.87[EUR][1000 genomes]
rs947875	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102601600-102603200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:102602200-102606600	Weak transcription	H9 Cell Line	embryonic stem cell

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