Variant report

Variant	rs1940048
Chromosome Location	chr11:102547301-102547302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10895337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10895347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225362	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11225367	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11225372	0.84[EUR][1000 genomes]
rs11225376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225388	0.89[ASN][1000 genomes]
rs11225389	0.86[ASN][1000 genomes]
rs11225394	0.88[ASN][1000 genomes]
rs11225399	0.83[ASN][1000 genomes]
rs11225400	0.83[ASN][1000 genomes]
rs11603733	0.91[ASN][1000 genomes]
rs11605152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11607205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361599	0.89[ASN][1000 genomes]
rs12364257	0.89[ASN][1000 genomes]
rs12365082	0.89[ASN][1000 genomes]
rs12366109	0.89[ASN][1000 genomes]
rs1276283	0.89[ASN][1000 genomes]
rs1276284	0.89[ASN][1000 genomes]
rs17357454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1892884	0.89[ASN][1000 genomes]
rs1892886	0.88[ASN][1000 genomes]
rs2509010	1.00[ASN][1000 genomes]
rs2846703	0.96[ASN][1000 genomes]
rs2846707	0.89[ASN][1000 genomes]
rs34043888	0.85[ASN][1000 genomes]
rs34326700	0.89[ASN][1000 genomes]
rs34546185	0.88[ASN][1000 genomes]
rs3809018	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61893901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61893905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893906	1.00[ASN][1000 genomes]
rs61893941	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs947875	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102546800-102547400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:102546800-102548000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:102547200-102547400	Enhancers	HSMMtube	muscle
4	chr11:102547200-102548000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:102547200-102548600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:102547200-102548600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links