Variant report

Variant	rs10895347
Chromosome Location	chr11:102557130-102557131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10895331	0.80[ASN][1000 genomes]
rs10895337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10895349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225348	0.80[ASN][1000 genomes]
rs11225353	0.80[ASN][1000 genomes]
rs11225362	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225367	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225372	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11225376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11605152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606477	0.80[ASN][1000 genomes]
rs11607177	0.82[ASN][1000 genomes]
rs11607205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17357454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2509010	0.84[ASN][1000 genomes]
rs2846703	0.81[ASN][1000 genomes]
rs3809018	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61893868	0.80[ASN][1000 genomes]
rs61893869	0.80[ASN][1000 genomes]
rs61893901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61893906	0.84[ASN][1000 genomes]
rs61893941	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102555200-102557200	Enhancers	HMEC	breast
2	chr11:102555400-102557200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:102555600-102557600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:102555600-102558200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102556000-102557400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:102556000-102557400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:102556000-102558200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:102556000-102558400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:102556200-102557200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:102556200-102557200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:102556200-102557400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:102556600-102558400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:102556600-102558600	Enhancers	Stomach Mucosa	stomach
14	chr11:102556800-102557200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:102556800-102558200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:102556800-102558200	Enhancers	NHEK	skin

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