Variant report

Variant	rs11225353
Chromosome Location	chr11:102509835-102509836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10895329	0.95[ASN][1000 genomes]
rs10895330	0.95[ASN][1000 genomes]
rs10895331	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895337	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10895347	0.80[ASN][1000 genomes]
rs10895351	0.81[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10895352	0.81[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11225348	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225350	0.95[ASN][1000 genomes]
rs11225351	0.95[ASN][1000 genomes]
rs11225352	0.95[ASN][1000 genomes]
rs11225355	0.94[ASN][1000 genomes]
rs11225362	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11225367	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11225372	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11225376	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11225388	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs11225389	0.83[CHB][hapmap]
rs11225399	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11225400	0.82[CHB][hapmap]
rs11605152	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11606477	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607177	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607205	0.80[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12363883	0.95[ASN][1000 genomes]
rs12363884	0.95[ASN][1000 genomes]
rs17357454	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1892886	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1940061	0.92[ASN][1000 genomes]
rs2509010	0.83[CHB][hapmap]
rs2846703	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3809018	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs61893868	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893869	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893901	0.80[ASN][1000 genomes]
rs61895692	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895693	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895694	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102500000-102510600	Weak transcription	A549	lung
2	chr11:102502200-102510200	Weak transcription	Liver	Liver
3	chr11:102508400-102511800	Weak transcription	Pancreas	Pancrea
4	chr11:102509800-102510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:102509800-102512200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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