Variant report

Variant	rs1940061
Chromosome Location	chr11:102510453-102510454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10895329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895331	0.90[ASN][1000 genomes]
rs10895337	0.90[ASN][1000 genomes]
rs10895351	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10895352	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11225348	0.92[ASN][1000 genomes]
rs11225350	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225351	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225353	0.92[ASN][1000 genomes]
rs11225355	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225362	0.90[ASN][1000 genomes]
rs11225367	0.90[ASN][1000 genomes]
rs11225372	0.87[ASN][1000 genomes]
rs11225376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11225388	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs11225389	0.83[CHB][hapmap]
rs11225399	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11225400	0.82[CHB][hapmap]
rs11605152	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11606477	0.92[ASN][1000 genomes]
rs11607177	0.91[ASN][1000 genomes]
rs11607205	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12363883	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12363884	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17357454	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1892886	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs2509010	0.83[CHB][hapmap]
rs2846703	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3809018	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs61893868	0.92[ASN][1000 genomes]
rs61893869	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102500000-102510600	Weak transcription	A549	lung
2	chr11:102508400-102511800	Weak transcription	Pancreas	Pancrea
3	chr11:102509800-102512200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102510200-102511400	Enhancers	Liver	Liver
5	chr11:102510400-102510800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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