Variant report

Variant	rs11225372
Chromosome Location	chr11:102534171-102534172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10895329	0.89[ASN][1000 genomes]
rs10895330	0.89[ASN][1000 genomes]
rs10895331	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10895337	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895347	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895349	0.84[EUR][1000 genomes]
rs10895351	0.84[EUR][1000 genomes]
rs10895352	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11225348	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11225350	0.89[ASN][1000 genomes]
rs11225351	0.89[ASN][1000 genomes]
rs11225352	0.89[ASN][1000 genomes]
rs11225353	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11225355	0.91[ASN][1000 genomes]
rs11225362	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225367	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225376	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11225380	0.84[EUR][1000 genomes]
rs11605152	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11606477	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11607177	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11607205	0.84[EUR][1000 genomes]
rs12363883	0.89[ASN][1000 genomes]
rs12363884	0.89[ASN][1000 genomes]
rs17357454	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1940048	0.84[EUR][1000 genomes]
rs1940061	0.87[ASN][1000 genomes]
rs3809018	0.80[EUR][1000 genomes]
rs61893868	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61893869	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61893901	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61893905	0.83[EUR][1000 genomes]
rs61895692	1.00[AFR][1000 genomes]
rs61895693	1.00[AFR][1000 genomes]
rs61895694	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102525000-102546400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:102534000-102536600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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