Variant report
| Variant | rs1276283 |
|---|---|
| Chromosome Location | chr11:102581918-102581919 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10895349 | 0.89[ASN][1000 genomes] |
| rs10895351 | 0.88[ASN][1000 genomes] |
| rs11225380 | 0.88[ASN][1000 genomes] |
| rs11225388 | 1.00[ASN][1000 genomes] |
| rs11225389 | 0.96[ASN][1000 genomes] |
| rs11225394 | 0.98[ASN][1000 genomes] |
| rs11225399 | 0.93[ASN][1000 genomes] |
| rs11225400 | 0.93[ASN][1000 genomes] |
| rs11603733 | 0.98[ASN][1000 genomes] |
| rs11607205 | 0.89[ASN][1000 genomes] |
| rs12361599 | 1.00[ASN][1000 genomes] |
| rs12364257 | 1.00[ASN][1000 genomes] |
| rs12365082 | 1.00[ASN][1000 genomes] |
| rs12366109 | 1.00[ASN][1000 genomes] |
| rs1276282 | 0.88[AFR][1000 genomes] |
| rs1276284 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1291327 | 0.88[AFR][1000 genomes] |
| rs1892884 | 1.00[ASN][1000 genomes] |
| rs1892886 | 0.98[ASN][1000 genomes] |
| rs1939018 | 0.88[AFR][1000 genomes] |
| rs1940048 | 0.89[ASN][1000 genomes] |
| rs2509010 | 0.89[ASN][1000 genomes] |
| rs2846703 | 0.93[ASN][1000 genomes] |
| rs2846707 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34043888 | 0.95[ASN][1000 genomes] |
| rs34326700 | 1.00[ASN][1000 genomes] |
| rs34546185 | 0.98[ASN][1000 genomes] |
| rs3809018 | 0.93[ASN][1000 genomes] |
| rs61893905 | 0.89[ASN][1000 genomes] |
| rs61893906 | 0.89[ASN][1000 genomes] |
| rs61893941 | 0.93[ASN][1000 genomes] |
| rs947875 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832252 | chr11:102445479-102627879 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037454 | chr11:102487521-102601233 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541156 | chr11:102487521-102601233 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:102579800-102582000 | Enhancers | Primary neutrophils fromperipheralblood | blood |
| 2 | chr11:102581200-102582800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 3 | chr11:102581600-102582800 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
