Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1276273	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1276282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1276283	0.88[AFR][1000 genomes]
rs1276284	0.88[AFR][1000 genomes]
rs1291326	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1291327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1320632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1939011	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1939020	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1940479	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1940481	0.87[AMR][1000 genomes]
rs2155052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2701988	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2701994	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2846356	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2846364	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2846702	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2846706	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2846707	0.88[AFR][1000 genomes]
rs6590984	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7121624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs947875	0.86[AFR][1000 genomes]
rs948217	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102582000-102585000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
2	chr11:102583600-102586600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:102583800-102586600	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: