Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1276273	0.91[AMR][1000 genomes]
rs1276282	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1291326	0.91[AMR][1000 genomes]
rs1291327	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1320632	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1939011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1939018	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1939020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940479	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1940481	0.85[CEU][hapmap];0.91[AMR][1000 genomes]
rs2155052	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155053	0.82[CEU][hapmap]
rs2701988	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2701994	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2846356	0.91[AMR][1000 genomes]
rs2846363	1.00[CEU][hapmap]
rs2846364	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2846702	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2846706	0.91[AMR][1000 genomes]
rs7121624	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs948217	0.85[CEU][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102592400-102594600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:102592400-102596200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:102592800-102595600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:102593400-102595400	Weak transcription	HMEC	breast
5	chr11:102593600-102598800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:102594000-102594600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr11:102594400-102594600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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