Variant report

Variant	rs1940481
Chromosome Location	chr11:102562828-102562829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1276267	0.82[AFR][1000 genomes]
rs1276271	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1276273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1276282	0.87[AMR][1000 genomes]
rs1291325	0.82[AFR][1000 genomes]
rs1291326	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1291327	0.87[AMR][1000 genomes]
rs1320632	0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs1939011	0.91[AMR][1000 genomes]
rs1939018	0.87[AMR][1000 genomes]
rs1939020	0.87[AMR][1000 genomes]
rs1940472	0.82[AFR][1000 genomes]
rs1940479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2155052	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs2509010	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2701988	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2701994	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2846343	0.82[AFR][1000 genomes]
rs2846356	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2846363	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs2846364	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2846702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2846706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2846707	1.00[YRI][hapmap]
rs61893906	0.81[AFR][1000 genomes]
rs6590984	0.91[AMR][1000 genomes]
rs7121624	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs948217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102558400-102565600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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