Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1276253	0.92[EUR][1000 genomes]
rs1276255	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1276256	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1276267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1276270	0.80[AMR][1000 genomes]
rs1276271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1276273	0.82[AFR][1000 genomes]
rs1276276	0.80[EUR][1000 genomes]
rs1276277	0.82[EUR][1000 genomes]
rs1291326	0.96[AFR][1000 genomes]
rs1940463	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1940472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1940479	0.82[AFR][1000 genomes]
rs1940481	0.82[AFR][1000 genomes]
rs2464361	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2509009	0.82[EUR][1000 genomes]
rs2509026	0.85[AFR][1000 genomes]
rs2509238	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2509239	0.85[AFR][1000 genomes]
rs2701988	0.82[AFR][1000 genomes]
rs2701994	0.82[AFR][1000 genomes]
rs2846341	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2846343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2846706	0.82[AFR][1000 genomes]
rs2846708	0.85[AFR][1000 genomes]
rs2846710	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2846712	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2846713	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs948217	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102546800-102548000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:102547200-102548000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:102547200-102548600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:102547200-102548600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:102547400-102548400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:102547400-102548600	Weak transcription	HSMMtube	muscle

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