Variant report
| Variant | rs2509026 |
|---|---|
| Chromosome Location | chr11:102512684-102512685 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1276253 | 0.94[AMR][1000 genomes] |
| rs1276255 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs1276256 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs1276267 | 0.85[AFR][1000 genomes] |
| rs1276271 | 0.85[AFR][1000 genomes] |
| rs1276276 | 0.82[AMR][1000 genomes] |
| rs1276277 | 0.82[AMR][1000 genomes] |
| rs1291325 | 0.85[AFR][1000 genomes] |
| rs1291326 | 0.82[AFR][1000 genomes] |
| rs1940463 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs1940472 | 0.85[AFR][1000 genomes] |
| rs2464361 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs2509009 | 0.82[AMR][1000 genomes] |
| rs2509238 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs2509239 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2846341 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs2846343 | 0.85[AFR][1000 genomes] |
| rs2846368 | 0.82[AFR][1000 genomes] |
| rs2846708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2846709 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2846710 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs2846712 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs2846713 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs7119077 | 0.82[EUR][1000 genomes] |
| rs948217 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832252 | chr11:102445479-102627879 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037454 | chr11:102487521-102601233 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541156 | chr11:102487521-102601233 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:102511000-102514600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr11:102512200-102513800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
