Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-817J15.3.1-1	chr11:102511885-102512066	XLOC_009261
2	lnc-RP11-817J15.3.1-1	chr11:102511869-102512066	XLOC_009261

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1276253	0.94[AMR][1000 genomes]
rs1276255	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1276256	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1276267	0.85[AFR][1000 genomes]
rs1276271	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs1276276	0.82[AMR][1000 genomes]
rs1276277	0.82[AMR][1000 genomes]
rs1276282	1.00[YRI][hapmap]
rs1291325	0.85[AFR][1000 genomes]
rs1291326	0.82[AFR][1000 genomes]
rs1940463	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1940472	0.85[AFR][1000 genomes]
rs1940481	0.83[YRI][hapmap]
rs2155052	0.83[YRI][hapmap]
rs2464361	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2509009	0.82[AMR][1000 genomes]
rs2509026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509238	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846341	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846343	0.85[AFR][1000 genomes]
rs2846368	0.82[AFR][1000 genomes]
rs2846708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2846709	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2846710	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846712	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846713	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs948217	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102509800-102512200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:102511000-102514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:102511600-102512200	Enhancers	Fetal Intestine Large	intestine
4	chr11:102511600-102512200	Flanking Active TSS	HepG2	liver
5	chr11:102511800-102512200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:102511800-102512200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:102511800-102512200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:102511800-102512200	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:102511800-102512200	Enhancers	Gastric	stomach
10	chr11:102511800-102512200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:102512000-102512200	Enhancers	Liver	Liver

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