Variant report

Variant	rs1291326
Chromosome Location	chr11:102556321-102556322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1276255	0.89[AFR][1000 genomes]
rs1276256	0.89[AFR][1000 genomes]
rs1276267	0.96[AFR][1000 genomes]
rs1276271	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1276273	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1276282	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1291325	0.96[AFR][1000 genomes]
rs1291327	0.87[AMR][1000 genomes]
rs1320632	0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs1939011	0.91[AMR][1000 genomes]
rs1939018	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1939020	0.87[AMR][1000 genomes]
rs1940463	0.89[AFR][1000 genomes]
rs1940472	0.96[AFR][1000 genomes]
rs1940479	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1940481	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2155052	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs2464361	0.89[AFR][1000 genomes]
rs2509010	0.82[YRI][hapmap]
rs2509026	0.82[AFR][1000 genomes]
rs2509238	0.89[AFR][1000 genomes]
rs2509239	0.82[AFR][1000 genomes]
rs2701988	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2701994	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2846341	0.89[AFR][1000 genomes]
rs2846343	0.96[AFR][1000 genomes]
rs2846356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846363	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs2846364	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2846368	0.93[AFR][1000 genomes]
rs2846702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2846706	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846707	1.00[YRI][hapmap]
rs2846708	0.82[AFR][1000 genomes]
rs2846710	0.89[AFR][1000 genomes]
rs2846712	0.89[AFR][1000 genomes]
rs2846713	0.86[AFR][1000 genomes]
rs6590984	0.91[AMR][1000 genomes]
rs7121624	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs948217	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102555200-102557200	Enhancers	HMEC	breast
2	chr11:102555400-102556600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:102555400-102557200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:102555600-102556800	Enhancers	HSMM	muscle
5	chr11:102555600-102557600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:102555600-102558200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:102556000-102556400	Enhancers	NH-A	brain
8	chr11:102556000-102556600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:102556000-102557400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:102556000-102557400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:102556000-102558200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:102556000-102558400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:102556200-102556400	Flanking Active TSS	NHEK	skin
14	chr11:102556200-102556800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:102556200-102556800	Enhancers	HSMMtube	muscle
16	chr11:102556200-102556800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:102556200-102557000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:102556200-102557200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:102556200-102557200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:102556200-102557400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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