Variant report

Variant	rs2509238
Chromosome Location	chr11:102531655-102531656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1276253	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1276255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1276256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1276267	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1276271	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1276276	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1276277	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1291325	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1291326	0.89[AFR][1000 genomes]
rs1940463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940472	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2464361	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2509009	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2509026	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2509239	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846343	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2846368	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2846708	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846709	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs948217	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102525000-102546400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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