Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1276253	0.94[AMR][1000 genomes]
rs1276255	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1276256	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1276276	0.82[AMR][1000 genomes]
rs1276277	0.82[AMR][1000 genomes]
rs1940463	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2464361	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2509009	0.82[AMR][1000 genomes]
rs2509010	1.00[ASW][hapmap]
rs2509026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509238	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2509239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2701988	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap]
rs2701994	1.00[ASW][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap]
rs2846341	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846364	0.82[MKK][hapmap]
rs2846702	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap]
rs2846703	0.90[LWK][hapmap]
rs2846708	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2846710	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846712	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2846713	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs948217	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102511000-102514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:102512800-102515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:102513800-102514400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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