Variant report

Variant	rs10897495
Chromosome Location	chr11:64175044-64175045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10792433	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10897490	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10897494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897496	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10897497	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11231781	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11231782	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1198935	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2840342	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34104296	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs534874	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs544761	0.88[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs553587	0.81[AMR][1000 genomes]
rs606063	0.80[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs670837	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs682848	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs692813	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs692842	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7124943	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7130280	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs750831	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936860	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7936992	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7949862	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10897495	VPS37C	cis	parietal	SCAN
rs10897495	FKBP2	cis	parietal	SCAN
rs10897495	ESRRA	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64171000-64175200	Weak transcription	Fetal Brain Male	brain
2	chr11:64172600-64176000	Enhancers	Placenta	Placenta
3	chr11:64172800-64175200	Enhancers	Fetal Intestine Large	intestine
4	chr11:64172800-64175200	Enhancers	Fetal Muscle Leg	muscle
5	chr11:64172800-64175600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:64173000-64175400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:64173000-64175600	Enhancers	Fetal Intestine Small	intestine
8	chr11:64173000-64175600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:64173000-64176000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:64173000-64178800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:64173200-64175600	Enhancers	Fetal Heart	heart
12	chr11:64173200-64178800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:64173400-64175600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:64173600-64175200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:64174000-64175400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:64174200-64176600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:64174200-64177200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:64174200-64182200	Weak transcription	Spleen	Spleen
19	chr11:64174400-64176400	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:64174400-64176600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:64174400-64177400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:64174400-64177400	Weak transcription	Fetal Lung	lung
23	chr11:64174400-64177600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:64174400-64177600	Weak transcription	HSMMtube	muscle
25	chr11:64174400-64182400	Weak transcription	Right Ventricle	heart
26	chr11:64174400-64182600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:64174400-64182600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:64174600-64175200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:64175000-64175200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:64175000-64175400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:64175000-64175400	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr11:64175000-64175400	Weak transcription	Fetal Stomach	stomach
33	chr11:64175000-64175600	Enhancers	Fetal Kidney	kidney
34	chr11:64175000-64176800	Weak transcription	Fetal Muscle Trunk	muscle

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