Variant report
| Variant | rs1198935 |
|---|---|
| Chromosome Location | chr11:64195599-64195600 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10792433 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10897490 | 0.80[AMR][1000 genomes] |
| rs10897494 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10897495 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10897496 | 0.84[AMR][1000 genomes] |
| rs10897497 | 0.82[AMR][1000 genomes] |
| rs11231781 | 0.83[AMR][1000 genomes] |
| rs2840342 | 0.82[AMR][1000 genomes] |
| rs34104296 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs534874 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs544761 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs553587 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs606063 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs670837 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs682848 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7124943 | 0.80[AMR][1000 genomes] |
| rs7130280 | 0.81[AMR][1000 genomes] |
| rs750831 | 0.82[AMR][1000 genomes] |
| rs7936395 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7936860 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832187 | chr11:64121969-64312300 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv976458 | chr11:64183936-64198230 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv976459 | chr11:64183936-64208134 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv555194 | chr11:64189110-64238023 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:64182800-64196000 | Weak transcription | H9 Cell Line | embryonic stem cell |
