Variant report

Variant	rs10792433
Chromosome Location	chr11:64193048-64193049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10897490	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10897494	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10897495	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10897496	0.84[AMR][1000 genomes]
rs10897497	0.82[AMR][1000 genomes]
rs10897503	0.84[YRI][hapmap]
rs11231781	0.83[AMR][1000 genomes]
rs1198935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840342	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34104296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs534874	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs544761	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs550840	0.82[JPT][hapmap]
rs553587	0.82[CEU][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs606063	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs670837	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs682848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7124943	0.80[AMR][1000 genomes]
rs7130280	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs750831	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7936395	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7936860	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976458	chr11:64183936-64198230	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv3470763	chr11:64190132-64193072	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3470774	chr11:64190132-64193072	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell

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