Variant report

Variant	rs10898526
Chromosome Location	chr11:86407279-86407280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86406157..86407720-chr11:86518083..86520022,2	MCF-7	breast:
2	chr11:86407227..86410961-chr11:86511491..86515054,3	MCF-7	breast:
3	chr11:86400130..86402377-chr11:86406306..86409290,2	K562	blood:
4	chr11:86402633..86405322-chr11:86405764..86408374,2	MCF-7	breast:
5	chr11:86404739..86407323-chr11:86454974..86456802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501626	0.90[CHB][hapmap]
rs11234738	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234739	0.95[ASN][1000 genomes]
rs11234741	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11234745	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11234746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574672	0.94[ASN][1000 genomes]
rs12575285	0.90[CHB][hapmap]
rs12789412	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17211458	0.90[CHB][hapmap]
rs17818845	0.82[CHB][hapmap]
rs17819523	0.89[CHB][hapmap]
rs17819683	0.90[CHB][hapmap]
rs1945142	0.90[CHB][hapmap]
rs2433412	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433413	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433414	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2433415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4619178	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539214	0.82[CHB][hapmap]
rs543336	0.95[ASN][1000 genomes]
rs544199	0.93[ASN][1000 genomes]
rs575273	0.95[ASN][1000 genomes]
rs575468	0.95[ASN][1000 genomes]
rs600242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs602498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs659301	0.81[CHB][hapmap]
rs66878934	0.87[ASN][1000 genomes]
rs672266	0.81[CHB][hapmap]
rs67655324	0.89[ASN][1000 genomes]
rs72961766	0.86[ASN][1000 genomes]
rs72961771	0.94[ASN][1000 genomes]
rs746491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933920	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939319	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948924	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949348	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86385200-86411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86388000-86409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:86399600-86415800	Weak transcription	Fetal Heart	heart
5	chr11:86400600-86410800	Weak transcription	Psoas Muscle	Psoas
6	chr11:86400600-86414800	Weak transcription	Ovary	ovary
7	chr11:86402800-86407600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr11:86402800-86408000	Enhancers	HSMM	muscle
9	chr11:86402800-86408600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:86402800-86410600	Enhancers	NHDF-Ad	bronchial
11	chr11:86403000-86408000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:86403200-86408000	Enhancers	Osteobl	bone
13	chr11:86403400-86408400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:86404800-86408400	Enhancers	HMEC	breast
15	chr11:86405000-86408600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:86405200-86407800	Enhancers	Fetal Lung	lung
17	chr11:86405400-86408400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:86405600-86407400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:86405600-86411200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:86405800-86408400	Enhancers	NHLF	lung
21	chr11:86406000-86407800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:86406000-86408000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:86406000-86408200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:86406000-86408600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:86406200-86408600	Enhancers	NHEK	skin
26	chr11:86406400-86407800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:86406400-86407800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:86406400-86407800	Enhancers	HUVEC	blood vessel
29	chr11:86406400-86408400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:86406400-86408400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:86406400-86408600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:86406600-86407600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr11:86406600-86407800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:86406600-86408000	Enhancers	Aorta	Aorta
35	chr11:86406800-86407600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:86406800-86407600	Flanking Active TSS	A549	lung
37	chr11:86406800-86407800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:86406800-86408000	Enhancers	Stomach Smooth Muscle	stomach
39	chr11:86407000-86407600	Enhancers	Adipose Nuclei	Adipose
40	chr11:86407000-86408400	Enhancers	Hela-S3	cervix
41	chr11:86407000-86410800	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
43	chr11:86407200-86407400	Enhancers	HSMMtube	muscle
44	chr11:86407200-86407400	Enhancers	NH-A	brain
45	chr11:86407200-86407600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:86407200-86407600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:86407200-86407800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:86407200-86407800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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