Variant report

Variant	rs72961766
Chromosome Location	chr11:86397331-86397332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10898526	0.86[ASN][1000 genomes]
rs11234738	0.90[ASN][1000 genomes]
rs11234739	0.89[ASN][1000 genomes]
rs11234741	0.88[ASN][1000 genomes]
rs11234743	0.88[ASN][1000 genomes]
rs11234745	0.86[ASN][1000 genomes]
rs11234746	0.85[ASN][1000 genomes]
rs12573953	0.96[EUR][1000 genomes]
rs12574672	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575285	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12575580	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12789412	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17211458	0.88[EUR][1000 genomes]
rs17211563	0.91[EUR][1000 genomes]
rs17211584	0.93[EUR][1000 genomes]
rs17818784	0.91[EUR][1000 genomes]
rs17818845	0.96[EUR][1000 genomes]
rs2433412	0.86[ASN][1000 genomes]
rs2433413	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2433414	0.85[ASN][1000 genomes]
rs2433415	0.85[ASN][1000 genomes]
rs4619178	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs471780	0.93[EUR][1000 genomes]
rs539214	0.93[EUR][1000 genomes]
rs543336	0.89[ASN][1000 genomes]
rs544199	0.86[ASN][1000 genomes]
rs56095595	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs575273	0.86[ASN][1000 genomes]
rs575468	0.86[ASN][1000 genomes]
rs581796	0.93[EUR][1000 genomes]
rs600242	0.85[ASN][1000 genomes]
rs60229086	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs602498	0.86[ASN][1000 genomes]
rs60379752	0.96[EUR][1000 genomes]
rs623785	0.93[EUR][1000 genomes]
rs659301	0.93[EUR][1000 genomes]
rs66878934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67655324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs686768	0.82[EUR][1000 genomes]
rs687138	0.93[EUR][1000 genomes]
rs72957414	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72957420	0.91[EUR][1000 genomes]
rs72957437	0.93[EUR][1000 genomes]
rs72957439	0.93[EUR][1000 genomes]
rs72957441	0.93[EUR][1000 genomes]
rs72957457	0.93[EUR][1000 genomes]
rs72957470	0.93[EUR][1000 genomes]
rs72957473	0.96[EUR][1000 genomes]
rs72957476	0.96[EUR][1000 genomes]
rs72959410	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72959421	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72959427	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72959431	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72961771	0.92[ASN][1000 genomes]
rs746491	0.85[ASN][1000 genomes]
rs7933920	0.89[ASN][1000 genomes]
rs7939319	0.88[ASN][1000 genomes]
rs7948924	0.85[ASN][1000 genomes]
rs949348	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3360406	chr11:86396204-86398252	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86384800-86397800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:86384800-86400400	Weak transcription	Gastric	stomach
3	chr11:86385200-86411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86388000-86409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:86389600-86397800	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:86389800-86399600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86390000-86403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:86390200-86398600	Weak transcription	Osteobl	bone
10	chr11:86390200-86399800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:86390400-86398000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:86390400-86399800	Weak transcription	Fetal Kidney	kidney
13	chr11:86390600-86397800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:86391800-86399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:86392200-86399600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:86393000-86397800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:86393000-86406800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:86393600-86397800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:86393600-86397800	Weak transcription	Fetal Lung	lung
20	chr11:86393600-86398000	Weak transcription	Fetal Heart	heart
21	chr11:86393600-86398200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:86393600-86399600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:86393600-86399800	Weak transcription	Aorta	Aorta
24	chr11:86393800-86397600	Weak transcription	Psoas Muscle	Psoas
25	chr11:86393800-86397800	Weak transcription	Ovary	ovary
26	chr11:86393800-86397800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:86393800-86399800	Weak transcription	Right Ventricle	heart
28	chr11:86393800-86400400	Weak transcription	Pancreas	Pancrea
29	chr11:86394000-86398000	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:86394400-86397800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:86394400-86399400	Weak transcription	Right Atrium	heart
32	chr11:86394600-86399400	Weak transcription	Left Ventricle	heart
33	chr11:86395200-86397600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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