Variant report

Variant	rs10899077
Chromosome Location	chr11:74859782-74859783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74853654..74855652-chr11:74858777..74860606,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10793114	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899076	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899078	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236348	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236349	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236350	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236351	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236352	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236353	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236354	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236357	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236365	0.89[EUR][1000 genomes]
rs11822379	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12361277	0.86[AMR][1000 genomes]
rs4100076	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4397881	0.88[AMR][1000 genomes]
rs4944073	0.92[AMR][1000 genomes]
rs4944074	0.92[EUR][1000 genomes]
rs4944990	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944993	0.92[AMR][1000 genomes]
rs4944994	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59633704	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67904312	0.92[AMR][1000 genomes]
rs67947132	0.90[AMR][1000 genomes]
rs7125268	0.90[EUR][1000 genomes]
rs72996586	0.92[AMR][1000 genomes]
rs72998525	0.84[AMR][1000 genomes]
rs949069	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
3	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:74853800-74862000	Enhancers	HepG2	liver
5	chr11:74853800-74862200	Enhancers	Placenta	Placenta
6	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
7	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
8	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:74856200-74860200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:74857000-74860000	Enhancers	Adipose Nuclei	Adipose
13	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
14	chr11:74857800-74859800	Enhancers	Lung	lung
15	chr11:74857800-74860000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:74857800-74860000	Enhancers	Fetal Muscle Leg	muscle
17	chr11:74858000-74860000	Enhancers	Fetal Thymus	thymus
18	chr11:74858200-74860000	Enhancers	Spleen	Spleen
19	chr11:74858200-74861400	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:74858600-74860000	Enhancers	Brain Hippocampus Middle	brain
21	chr11:74858600-74860400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:74858800-74859800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:74859000-74860000	Enhancers	Fetal Brain Male	brain
24	chr11:74859000-74861400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
26	chr11:74859000-74862400	Weak transcription	Liver	Liver
27	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:74859200-74860000	Enhancers	Fetal Stomach	stomach
29	chr11:74859200-74861800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
31	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:74859400-74859800	Weak transcription	Esophagus	oesophagus
34	chr11:74859400-74860000	Enhancers	Pancreas	Pancrea
35	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr11:74859600-74860600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links