Variant report

Variant	rs11236348
Chromosome Location	chr11:74856481-74856482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74850392..74852587-chr11:74855694..74858278,2	MCF-7	breast:
2	chr11:74854818..74856886-chr11:74915338..74916882,2	K562	blood:
3	chr11:74854624..74857110-chr11:74957836..74960008,2	MCF-7	breast:
4	chr11:74855408..74858303-chr11:74861375..74864283,3	K562	blood:
5	chr11:74856309..74859040-chr11:74914787..74916343,2	MCF-7	breast:
6	chr11:74851665..74854336-chr11:74855499..74858438,2	MCF-7	breast:
7	chr11:74855263..74857474-chr11:74861405..74863730,2	MCF-7	breast:
8	chr11:74733565..74734291-chr11:74855193..74856678,6	K562	blood:
9	chr11:74854240..74856798-chr11:74915145..74916958,23	MCF-7	breast:
10	chr11:74853916..74856659-chr11:74959240..74960360,18	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction
ENSG00000255395	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10793114	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899077	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899078	0.93[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899079	0.81[AMR][1000 genomes]
rs11236349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236354	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236357	0.93[CEU][hapmap];0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11236361	0.81[AMR][1000 genomes]
rs11236365	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs11822379	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11827488	0.82[CHB][hapmap]
rs12361277	0.84[ASN][1000 genomes]
rs17133732	0.83[JPT][hapmap]
rs4100076	0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs4397881	0.80[AMR][1000 genomes]
rs4944073	0.84[AMR][1000 genomes]
rs4944074	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs4944974	0.89[CHB][hapmap]
rs4944975	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs4944990	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944991	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944992	0.93[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944993	0.84[AMR][1000 genomes]
rs4944994	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57073688	0.81[AMR][1000 genomes]
rs59633704	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592602	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs67904312	0.84[AMR][1000 genomes]
rs67947132	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7125268	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs72996586	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs949069	0.87[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74858200	Weak transcription	Esophagus	oesophagus
3	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
4	chr11:74853800-74856600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:74853800-74856600	Enhancers	Brain Hippocampus Middle	brain
6	chr11:74853800-74857800	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:74853800-74862000	Enhancers	HepG2	liver
9	chr11:74853800-74862200	Enhancers	Placenta	Placenta
10	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
11	chr11:74854400-74857600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:74854400-74858400	Weak transcription	Left Ventricle	heart
13	chr11:74854400-74858400	Weak transcription	Right Atrium	heart
14	chr11:74854400-74858400	Weak transcription	Right Ventricle	heart
15	chr11:74854800-74856600	Weak transcription	A549	lung
16	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
17	chr11:74855400-74857000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:74855400-74857000	Weak transcription	Adipose Nuclei	Adipose
19	chr11:74855400-74857800	Weak transcription	Brain Anterior Caudate	brain
20	chr11:74855600-74856800	Weak transcription	Small Intestine	intestine
21	chr11:74855600-74856800	Enhancers	Dnd41	blood
22	chr11:74855600-74858200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:74855600-74858200	Weak transcription	Spleen	Spleen
24	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:74855800-74857000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:74855800-74857800	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:74855800-74858000	Weak transcription	Fetal Thymus	thymus
29	chr11:74855800-74858200	Weak transcription	Liver	Liver
30	chr11:74855800-74858200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:74855800-74858400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:74855800-74858800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:74855800-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:74856000-74857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:74856000-74857800	Weak transcription	Lung	lung
36	chr11:74856000-74858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:74856000-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:74856200-74860200	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr11:74856400-74859200	Enhancers	K562	blood
40	chr11:74856400-74859600	Enhancers	Colonic Mucosa	Colon

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