Variant report

Variant	rs57073688
Chromosome Location	chr11:74873179-74873180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74856790..74858510-chr11:74872953..74874736,2	K562	blood:
2	chr11:74868174..74871042-chr11:74871954..74874502,2	K562	blood:
3	chr11:74870955..74873792-chr11:74881314..74883069,2	K562	blood:
4	chr11:74868174..74870399-chr11:74871954..74873534,2	K562	blood:
5	chr11:74854253..74855928-chr11:74871794..74874336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10793114	0.82[AMR][1000 genomes]
rs10899076	0.82[AMR][1000 genomes]
rs10899078	0.81[ASN][1000 genomes]
rs10899079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236348	0.81[AMR][1000 genomes]
rs11236349	0.81[AMR][1000 genomes]
rs11236350	0.85[AMR][1000 genomes]
rs11236351	0.81[AMR][1000 genomes]
rs11236352	0.81[AMR][1000 genomes]
rs11236353	0.81[AMR][1000 genomes]
rs11236354	0.82[AMR][1000 genomes]
rs11236356	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11236357	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11236358	0.95[ASN][1000 genomes]
rs11236361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822379	0.82[AMR][1000 genomes]
rs12361277	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740839	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4100076	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4397881	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944073	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944990	0.82[AMR][1000 genomes]
rs4944992	0.81[ASN][1000 genomes]
rs4944993	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944994	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59633704	0.81[ASN][1000 genomes]
rs67904312	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67947132	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72996586	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998525	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs881217	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949069	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74867400-74873200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:74867600-74875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:74868600-74875200	Weak transcription	Ovary	ovary
6	chr11:74870000-74881000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:74870200-74873400	Enhancers	Adipose Nuclei	Adipose
8	chr11:74870400-74875000	Weak transcription	Small Intestine	intestine
9	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:74871200-74873400	Enhancers	HUVEC	blood vessel
11	chr11:74871400-74875200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:74871400-74886800	Weak transcription	Brain Substantia Nigra	brain
13	chr11:74871600-74875000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:74871600-74875600	Enhancers	HepG2	liver
15	chr11:74872200-74873200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:74872200-74873400	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:74872200-74885400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:74872400-74873400	Enhancers	Right Atrium	heart
19	chr11:74872400-74875400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:74872400-74876400	Enhancers	Placenta	Placenta
21	chr11:74872400-74883600	Genic enhancers	Fetal Intestine Small	intestine
22	chr11:74872600-74873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:74872600-74873400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:74872600-74873400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:74872600-74873800	Enhancers	Colonic Mucosa	Colon
26	chr11:74872600-74874800	Enhancers	Stomach Mucosa	stomach
27	chr11:74872600-74877200	Enhancers	Fetal Muscle Leg	muscle
28	chr11:74872800-74873200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:74872800-74873200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:74872800-74873400	Enhancers	Left Ventricle	heart
31	chr11:74872800-74873800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:74872800-74874000	Transcr. at gene 5' and 3'	Liver	Liver
33	chr11:74872800-74874000	Enhancers	Gastric	stomach
34	chr11:74872800-74874000	Enhancers	Lung	lung
35	chr11:74872800-74874000	Enhancers	Pancreas	Pancrea
36	chr11:74872800-74878200	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:74872800-74878800	Genic enhancers	Fetal Intestine Large	intestine
38	chr11:74873000-74873200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr11:74873000-74873200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:74873000-74873200	Enhancers	Fetal Stomach	stomach
41	chr11:74873000-74873200	Enhancers	Fetal Thymus	thymus
42	chr11:74873000-74873400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
43	chr11:74873000-74873600	Enhancers	Brain Hippocampus Middle	brain
44	chr11:74873000-74874000	ZNF genes & repeats	Spleen	Spleen
45	chr11:74873000-74876200	Enhancers	Right Ventricle	heart

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