Variant report

Variant	rs949069
Chromosome Location	chr11:74877573-74877574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74867339..74870278-chr11:74875624..74878251,3	K562	blood:
2	chr11:74866771..74870278-chr11:74874697..74878251,4	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10793114	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899076	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899077	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899078	0.90[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899079	0.91[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11236348	0.87[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236349	0.89[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236350	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236351	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236352	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236353	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236354	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11236356	0.87[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs11236357	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236361	0.91[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11236365	0.95[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11822379	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12422149	0.91[JPT][hapmap]
rs3740839	0.91[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4100076	0.83[CHD][hapmap]
rs4397881	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs4944073	0.81[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs4944074	0.86[CEU][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs4944975	0.81[CEU][hapmap]
rs4944990	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944991	0.90[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944992	0.90[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944993	0.87[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs4944994	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57073688	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59633704	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7125268	0.95[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes]
rs72998525	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs881217	0.91[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74870000-74881000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:74871400-74886800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:74872200-74885400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:74872400-74883600	Genic enhancers	Fetal Intestine Small	intestine
8	chr11:74872800-74878200	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:74872800-74878800	Genic enhancers	Fetal Intestine Large	intestine
10	chr11:74873200-74877800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:74873400-74879400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:74874000-74878000	Weak transcription	Gastric	stomach
13	chr11:74874000-74885800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:74875400-74878200	Weak transcription	Stomach Mucosa	stomach
15	chr11:74875400-74885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:74875600-74885400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:74875800-74877800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:74875800-74878400	Genic enhancers	Duodenum Mucosa	Duodenum
19	chr11:74875800-74885600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:74876000-74878000	Weak transcription	Left Ventricle	heart
21	chr11:74876000-74885800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:74876200-74877600	Weak transcription	Lung	lung
23	chr11:74876200-74877800	Weak transcription	Colonic Mucosa	Colon
24	chr11:74876200-74878000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:74876200-74878000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:74876200-74878800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:74876200-74879200	Enhancers	HepG2	liver
28	chr11:74876200-74879800	Weak transcription	Right Ventricle	heart
29	chr11:74876200-74880000	Weak transcription	Small Intestine	intestine
30	chr11:74876200-74880200	Weak transcription	Pancreas	Pancrea
31	chr11:74876200-74884200	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:74876200-74886000	Weak transcription	Fetal Thymus	thymus
33	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
34	chr11:74876400-74882400	Genic enhancers	Liver	Liver
35	chr11:74876800-74877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:74876800-74878800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:74876800-74879800	Weak transcription	Placenta	Placenta
38	chr11:74877200-74877800	Weak transcription	Fetal Stomach	stomach
39	chr11:74877200-74879200	Weak transcription	Fetal Muscle Leg	muscle

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