Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr11:74802184-74802545	K562	blood:	n/a	n/a
2	SETDB1	chr11:74802083-74802760	U2OS	brain:	n/a	n/a
3	KAP1	chr11:74802228-74802962	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74796178..74800020-chr11:74800917..74805286,4	K562	blood:

Variant related genes	Relation type
OR2AT4	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10899076	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap]
rs10899078	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs11236326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236348	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11236349	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11236350	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap]
rs11236357	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs11827488	0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs12281823	0.86[AMR][1000 genomes]
rs12420224	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12421194	0.81[ASN][1000 genomes]
rs17133732	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs4372476	0.85[EUR][1000 genomes]
rs4944074	0.86[CEU][hapmap]
rs4944974	0.95[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs4944990	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4944991	0.90[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap]
rs4944992	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs4944994	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs55986601	0.87[ASN][1000 genomes]
rs6592602	0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7122309	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs949069	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4944975	FCHSD2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74801800-74803200	ZNF genes & repeats	K562	blood
2	chr11:74802000-74802400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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