Variant report

Variant	rs12281823
Chromosome Location	chr11:74817585-74817586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11236326	0.86[AMR][1000 genomes]
rs11827488	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12361277	0.83[ASN][1000 genomes]
rs12420224	0.80[AMR][1000 genomes]
rs12421194	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17133732	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944072	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944974	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944975	0.86[AMR][1000 genomes]
rs55986601	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58626404	0.93[ASN][1000 genomes]
rs61117837	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592602	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66687047	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67947132	0.83[ASN][1000 genomes]
rs7122309	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72996586	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74811600-74818200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:74814800-74818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:74815000-74818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:74815200-74817600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:74815200-74818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:74815200-74818200	Weak transcription	NHDF-Ad	bronchial
7	chr11:74815200-74818200	Weak transcription	NHLF	lung
8	chr11:74816400-74819000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:74816600-74818200	Weak transcription	A549	lung
10	chr11:74816800-74818200	Weak transcription	NH-A	brain
11	chr11:74817000-74818000	Weak transcription	Osteobl	bone
12	chr11:74817000-74818200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:74817000-74818200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:74817000-74818400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:74817000-74819400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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