Variant report

Variant	rs7122309
Chromosome Location	chr11:74815373-74815374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000255136	Chromatin interaction
ENSG00000213333	Chromatin interaction
ENSG00000261594	Chromatin interaction
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11236326	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11827488	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281823	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12361277	0.84[ASN][1000 genomes]
rs12420224	0.82[AMR][1000 genomes]
rs12421194	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17133732	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944072	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944974	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944975	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55986601	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58626404	0.95[ASN][1000 genomes]
rs61117837	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592602	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66687047	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67947132	0.84[ASN][1000 genomes]
rs72996586	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74811600-74818200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:74811800-74816600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:74811800-74816600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:74812000-74816400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:74812400-74816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:74814800-74818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:74815000-74815400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:74815000-74818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:74815200-74815400	Enhancers	GM12878-XiMat	blood
10	chr11:74815200-74815600	Enhancers	A549	lung
11	chr11:74815200-74815600	Enhancers	K562	blood
12	chr11:74815200-74816200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:74815200-74816400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:74815200-74816400	Weak transcription	NH-A	brain
15	chr11:74815200-74816600	Weak transcription	Osteobl	bone
16	chr11:74815200-74817600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:74815200-74818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:74815200-74818200	Weak transcription	NHDF-Ad	bronchial
19	chr11:74815200-74818200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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