Variant report

Variant	rs12421194
Chromosome Location	chr11:74810232-74810233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11236326	0.81[ASN][1000 genomes]
rs11827488	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12270538	0.81[EUR][1000 genomes]
rs12281823	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12288006	0.81[EUR][1000 genomes]
rs12292336	0.81[EUR][1000 genomes]
rs12420224	0.87[ASN][1000 genomes]
rs17133732	0.81[ASN][1000 genomes]
rs4944072	0.81[ASN][1000 genomes]
rs4944974	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944975	0.81[ASN][1000 genomes]
rs55986601	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58626404	0.84[ASN][1000 genomes]
rs6592602	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66687047	0.81[ASN][1000 genomes]
rs7122309	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946082	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74806600-74811200	Weak transcription	A549	lung
2	chr11:74806600-74811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:74806800-74811400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:74807400-74811000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:74808000-74814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:74809000-74810400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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