Variant report

Variant	rs10899952
Chromosome Location	chr10:44427021-44427022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508876	0.82[ASN][1000 genomes]
rs10899949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238771	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238781	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12241154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244340	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12248836	1.00[CEU][hapmap]
rs17154641	0.97[ASN][1000 genomes]
rs7070754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914991	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920691	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9731633	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9733045	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44424600-44427400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:44424800-44427600	Enhancers	Osteobl	bone
4	chr10:44425000-44427600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44425000-44427800	Enhancers	NHDF-Ad	bronchial
6	chr10:44425600-44427200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44425600-44427600	Enhancers	HSMM	muscle
8	chr10:44425800-44427200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:44425800-44427400	Enhancers	NHLF	lung
10	chr10:44426000-44427600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44426400-44427200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:44426400-44427200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:44426400-44427200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:44426400-44427600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:44426800-44427600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:44427000-44427200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:44427000-44427400	Flanking Active TSS	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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