Variant report

Variant	rs7920691
Chromosome Location	chr10:44394825-44394826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44387546..44389292-chr10:44394424..44396340,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508875	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899952	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11238771	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238779	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11238781	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12241154	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12244340	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12248836	1.00[CEU][hapmap]
rs17154641	0.85[ASN][1000 genomes]
rs7070754	0.88[ASN][1000 genomes]
rs7914991	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9731633	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9733045	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44388800-44397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44393600-44395000	Enhancers	Gastric	stomach
4	chr10:44393600-44395800	Enhancers	Adipose Nuclei	Adipose
5	chr10:44393800-44396000	Enhancers	Right Atrium	heart
6	chr10:44393800-44396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:44394000-44395000	Enhancers	Esophagus	oesophagus
8	chr10:44394000-44395000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr10:44394000-44395200	Enhancers	Fetal Heart	heart
10	chr10:44394000-44395200	Enhancers	Left Ventricle	heart
11	chr10:44394000-44395400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:44394000-44395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44394000-44395400	Enhancers	NHDF-Ad	bronchial
14	chr10:44394000-44396000	Enhancers	Spleen	Spleen
15	chr10:44394000-44397800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:44394200-44395000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:44394200-44395200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:44394200-44395200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:44394200-44395400	Enhancers	Osteobl	bone
20	chr10:44394200-44397600	Enhancers	Fetal Muscle Leg	muscle
21	chr10:44394400-44395000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:44394400-44395000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:44394400-44395200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:44394400-44395200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:44394400-44395200	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:44394400-44395200	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:44394400-44395400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:44394400-44395800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:44394600-44395000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:44394600-44395000	Enhancers	Brain Substantia Nigra	brain
31	chr10:44394600-44395000	Enhancers	Stomach Smooth Muscle	stomach
32	chr10:44394600-44395200	Enhancers	Brain Angular Gyrus	brain
33	chr10:44394600-44395200	Enhancers	Pancreas	Pancrea
34	chr10:44394600-44395600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:44394600-44395800	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:44394800-44395000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:44394800-44395200	Enhancers	Brain Anterior Caudate	brain
38	chr10:44394800-44395200	Enhancers	Fetal Kidney	kidney
39	chr10:44394800-44395200	Enhancers	Right Ventricle	heart
40	chr10:44394800-44395600	Enhancers	Muscle Satellite Cultured Cells	--

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