Variant report

Variant	rs11238779
Chromosome Location	chr10:44423144-44423145
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508875	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508876	0.82[ASN][1000 genomes]
rs10899949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238771	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238781	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12241154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244340	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12248836	1.00[CEU][hapmap]
rs17154641	0.97[ASN][1000 genomes]
rs7070754	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914991	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920691	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9731633	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9733045	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44408200-44424000	Weak transcription	Right Ventricle	heart
2	chr10:44418200-44424000	Weak transcription	Left Ventricle	heart
3	chr10:44421800-44426000	Enhancers	Fetal Heart	heart
4	chr10:44422600-44423200	Enhancers	Spleen	Spleen
5	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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