Variant report

Variant	rs10899980
Chromosome Location	chr10:44608130-44608131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10899982	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11814490	0.86[AMR][1000 genomes]
rs11817296	0.84[AMR][1000 genomes]
rs12258788	0.86[AMR][1000 genomes]
rs12263005	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12265136	0.84[AMR][1000 genomes]
rs12265471	0.86[AMR][1000 genomes]
rs12268501	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12775481	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17155150	0.86[AMR][1000 genomes]
rs34012822	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35141318	0.88[AMR][1000 genomes]
rs35874476	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948607	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948836	0.88[AMR][1000 genomes]
rs4948837	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4948839	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4948846	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58626048	0.84[AMR][1000 genomes]
rs67594964	0.86[AMR][1000 genomes]
rs72784830	0.86[AMR][1000 genomes]
rs72784831	0.86[AMR][1000 genomes]
rs72786818	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7901445	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7909907	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7913521	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44607400-44608200	Enhancers	Stomach Mucosa	stomach
2	chr10:44607400-44608600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr10:44607400-44609800	Enhancers	HepG2	liver
4	chr10:44607600-44608200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:44607800-44608200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:44607800-44608600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:44608000-44608400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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