Variant report

Variant	rs35874476
Chromosome Location	chr10:44628303-44628304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44626321..44629935-chr10:44630488..44633644,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10218996	0.86[AFR][1000 genomes]
rs10899980	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899985	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11238857	0.84[AFR][1000 genomes]
rs11238866	0.80[EUR][1000 genomes]
rs11238867	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11238869	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11238870	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11238873	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11814490	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11815950	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11817296	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12254583	0.91[AFR][1000 genomes]
rs12254704	0.88[AFR][1000 genomes]
rs12258788	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263005	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265136	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265471	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265921	0.81[AFR][1000 genomes]
rs12266428	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12267582	0.83[AFR][1000 genomes]
rs12268501	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12763847	0.82[AFR][1000 genomes]
rs12764460	0.81[AFR][1000 genomes]
rs12766445	0.81[AFR][1000 genomes]
rs12774482	0.90[AFR][1000 genomes]
rs12775481	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155030	0.85[ASN][1000 genomes]
rs17155150	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1873758	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34012822	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141318	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35178639	0.83[AFR][1000 genomes]
rs35224046	0.83[AFR][1000 genomes]
rs4948602	0.86[AFR][1000 genomes]
rs4948604	0.80[EUR][1000 genomes]
rs4948607	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948824	0.86[AFR][1000 genomes]
rs4948830	0.88[AFR][1000 genomes]
rs4948831	0.96[ASN][1000 genomes]
rs4948834	1.00[ASN][1000 genomes]
rs4948835	0.91[AFR][1000 genomes]
rs4948836	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948837	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948839	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948840	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4948841	0.80[EUR][1000 genomes]
rs4948845	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4948846	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55774075	0.83[AFR][1000 genomes]
rs58626048	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59750388	1.00[ASN][1000 genomes]
rs6593400	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs67594964	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082703	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7088907	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71491028	0.83[AFR][1000 genomes]
rs72784830	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72784831	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72784832	0.86[AFR][1000 genomes]
rs72786818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895878	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7901170	0.99[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7901445	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904643	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7909907	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913521	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44627400-44628400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:44627600-44628800	Enhancers	Adipose Nuclei	Adipose
3	chr10:44627800-44628400	Enhancers	Right Atrium	heart
4	chr10:44627800-44628400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:44627800-44628400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:44627800-44628600	Enhancers	Left Ventricle	heart
7	chr10:44627800-44629200	Enhancers	Pancreas	Pancrea
8	chr10:44628000-44628600	Enhancers	NHDF-Ad	bronchial
9	chr10:44628200-44628400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44628200-44628400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44628200-44628600	Enhancers	Stomach Smooth Muscle	stomach

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