Variant report

Variant	rs11817296
Chromosome Location	chr10:44565194-44565195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10899980	0.84[AMR][1000 genomes]
rs11238836	0.81[AFR][1000 genomes]
rs11814490	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12258788	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12263005	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12265136	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12265471	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12268501	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12775481	0.92[AMR][1000 genomes]
rs17155030	0.95[ASN][1000 genomes]
rs17155150	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34012822	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35141318	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35874476	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948607	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948831	0.93[ASN][1000 genomes]
rs4948834	0.89[ASN][1000 genomes]
rs4948836	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948837	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948839	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948846	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58626048	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59750388	0.89[ASN][1000 genomes]
rs66536810	0.81[AFR][1000 genomes]
rs67269496	0.81[AFR][1000 genomes]
rs67594964	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7088907	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72784819	0.81[AFR][1000 genomes]
rs72784830	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72784831	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72786818	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7901170	0.84[ASN][1000 genomes]
rs7901445	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7909907	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7913521	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44559600-44565800	Weak transcription	Right Ventricle	heart
2	chr10:44561600-44565400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:44561600-44565800	Weak transcription	Aorta	Aorta
4	chr10:44561600-44565800	Weak transcription	Esophagus	oesophagus
5	chr10:44561800-44565200	Weak transcription	Fetal Brain Female	brain
6	chr10:44562000-44565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:44563000-44567600	Enhancers	Liver	Liver
8	chr10:44563200-44565400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:44564000-44566400	Enhancers	Pancreas	Pancrea
10	chr10:44564000-44567800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44564000-44567800	Enhancers	NHDF-Ad	bronchial
12	chr10:44564200-44565200	Enhancers	Left Ventricle	heart
13	chr10:44564200-44566200	Enhancers	Adipose Nuclei	Adipose
14	chr10:44564400-44567800	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:44564600-44565800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44564600-44566400	Enhancers	Brain Germinal Matrix	brain
17	chr10:44564600-44566600	Enhancers	Fetal Stomach	stomach
18	chr10:44564800-44565800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:44564800-44565800	Weak transcription	Lung	lung
20	chr10:44564800-44565800	Weak transcription	Ovary	ovary
21	chr10:44564800-44565800	Weak transcription	Right Atrium	heart
22	chr10:44564800-44566200	Enhancers	Brain Hippocampus Middle	brain
23	chr10:44564800-44566600	Weak transcription	Osteobl	bone
24	chr10:44564800-44567000	Enhancers	Fetal Brain Male	brain
25	chr10:44564800-44568000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:44565000-44565400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:44565000-44566200	Enhancers	Brain Anterior Caudate	brain
28	chr10:44565000-44566400	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:44565000-44566600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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