Variant report

Variant	rs7088907
Chromosome Location	chr10:44558990-44558991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44553090..44555102-chr10:44556651..44559208,2	K562	blood:
2	chr10:44558501..44560332-chr10:44561547..44563769,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10508880	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11238836	0.80[AFR][1000 genomes]
rs11814490	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11817296	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258788	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12263005	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12265136	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12265471	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12268501	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12775481	0.86[AMR][1000 genomes]
rs1492704	0.85[ASN][1000 genomes]
rs17154915	0.85[ASN][1000 genomes]
rs17154988	0.85[ASN][1000 genomes]
rs17155030	1.00[ASN][1000 genomes]
rs17155150	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34012822	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35141318	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35874476	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948607	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948823	0.85[ASN][1000 genomes]
rs4948831	0.88[ASN][1000 genomes]
rs4948834	0.85[ASN][1000 genomes]
rs4948836	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948837	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4948839	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4948846	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56803324	0.85[ASN][1000 genomes]
rs58626048	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59750388	0.85[ASN][1000 genomes]
rs66536810	0.80[AFR][1000 genomes]
rs67269496	0.80[AFR][1000 genomes]
rs67594964	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7096716	0.85[ASN][1000 genomes]
rs72784819	0.89[AFR][1000 genomes]
rs72784830	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72784831	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786818	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7898618	0.85[ASN][1000 genomes]
rs7901445	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7909907	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913521	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923238	0.85[ASN][1000 genomes]
rs950682	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7088907	C10orf10	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44553200-44560800	Weak transcription	Gastric	stomach
2	chr10:44553200-44561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44556000-44559000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44556000-44559200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44556800-44559000	Weak transcription	Ovary	ovary
6	chr10:44556800-44559000	Weak transcription	Pancreas	Pancrea
7	chr10:44556800-44561400	Weak transcription	Fetal Kidney	kidney
8	chr10:44557800-44559800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:44558600-44561200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44558800-44560800	Weak transcription	Esophagus	oesophagus
11	chr10:44558800-44562800	Enhancers	Fetal Stomach	stomach

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