Variant report

Variant	rs17154988
Chromosome Location	chr10:44542848-44542849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492704	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154827	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17154915	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155030	0.85[ASN][1000 genomes]
rs4948813	0.98[EUR][1000 genomes]
rs4948823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56803324	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58563011	0.93[AMR][1000 genomes]
rs7088907	0.85[ASN][1000 genomes]
rs7096716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923238	1.00[ASN][1000 genomes]
rs950682	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44538200-44547000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44539000-44543200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44539000-44543800	Enhancers	Fetal Stomach	stomach
4	chr10:44539200-44543200	Enhancers	Ovary	ovary
5	chr10:44539400-44546800	Weak transcription	Right Ventricle	heart
6	chr10:44539600-44543200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:44539800-44543400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:44540400-44543000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:44540600-44543600	Enhancers	Fetal Kidney	kidney
10	chr10:44540800-44543400	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:44540800-44544800	Weak transcription	Lung	lung
12	chr10:44541000-44543200	Enhancers	Brain Anterior Caudate	brain
13	chr10:44541200-44549800	Weak transcription	Left Ventricle	heart
14	chr10:44541400-44543000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:44541400-44543200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:44541400-44543200	Enhancers	Pancreas	Pancrea
17	chr10:44541600-44543200	Enhancers	Spleen	Spleen
18	chr10:44541600-44543400	Enhancers	Stomach Mucosa	stomach
19	chr10:44541800-44543000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:44541800-44543000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:44541800-44543200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:44541800-44543400	Enhancers	Adipose Nuclei	Adipose
23	chr10:44542000-44543000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:44542000-44543200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:44542000-44543200	Enhancers	Gastric	stomach
26	chr10:44542200-44543000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:44542200-44543200	Enhancers	Esophagus	oesophagus
28	chr10:44542200-44543200	Enhancers	Fetal Lung	lung
29	chr10:44542200-44546600	Weak transcription	Fetal Brain Male	brain
30	chr10:44542200-44547000	Weak transcription	Right Atrium	heart
31	chr10:44542400-44543000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:44542400-44543400	Enhancers	Brain Substantia Nigra	brain
33	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:44542400-44552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:44542600-44543200	Enhancers	Brain Hippocampus Middle	brain
37	chr10:44542600-44546200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:44542600-44546600	Weak transcription	Aorta	Aorta
39	chr10:44542600-44546600	Weak transcription	Osteobl	bone
40	chr10:44542600-44546800	Weak transcription	NHDF-Ad	bronchial
41	chr10:44542800-44543000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:44542800-44543000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:44542800-44543000	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr10:44542800-44543200	Enhancers	Primary hematopoietic stem cells	blood
45	chr10:44542800-44543200	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr10:44542800-44543200	Bivalent Enhancer	NHLF	lung
47	chr10:44542800-44543400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr10:44542800-44546600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:44542800-44546600	Weak transcription	NHEK	skin

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